{ "_id": "6a365bab3efcd9bda4404797", "Package": "spls", "Version": "2.3-3", "VersionNote": "Released 2.3-2 on 2025-06-30 on CRAN", "Title": "Sparse Partial Least Squares (SPLS) Regression and\nClassification", "Authors@R": "c(person(\"Dongjun\", \"Chung\", role = c(\"aut\"), email = \"chungdon@stat.wisc.edu\")\n, person(\"Hyonho\", \"Chun\", role = \"aut\", email = \"chun@stat.wisc.edu\")\n, person(\"Sunduz\", \"Keles\", role = \"aut\", email = \"keles@stat.wisc.edu\")\n, person(\"Valentin\", \"Todorov\", role = c(\"cre\"), email = \"valentin@todorov.at\", comment=c(ORCID = \"0000-0003-4215-0245\"))\n)", "Maintainer": "Valentin Todorov ", "Author": "Dongjun Chung [aut], Hyonho Chun [aut], Sunduz Keles [aut],\nValentin Todorov [cre]\n()", "Description": "Provides functions for fitting a sparse partial least\nsquares (SPLS) regression and classification (Chun and Keles\n(2010) ).", "License": "GPL (>= 3)", "URL": "https://github.com/valentint/spls", "BugReports": "https://github.com/valentint/spls/issues", "NeedsCompilation": "no", "Packaged": { "Date": "2026-06-20 09:19:08 UTC", "User": "root" }, "Repository": "https://valentint.r-universe.dev", "Date/Publication": "2025-07-10 09:54:24 UTC", "RemoteUrl": "https://github.com/valentint/spls", "RemoteRef": "HEAD", "RemoteSha": "77be94a54f8185641f762d6880df1b512406cb94", "MD5sum": "afb5ab1652aeeb85dee055513d206046", "_user": "valentint", "_type": "src", "_file": "spls_2.3-3.tar.gz", "_fileid": "8eed375ea536438bef846ddeef6427eee56dbf79150ca225498dda49caa013a0", "_filesize": 2565190, "_sha256": "8eed375ea536438bef846ddeef6427eee56dbf79150ca225498dda49caa013a0", "_created": "2026-06-20T09:19:08.000Z", "_published": "2026-06-20T09:21:47.170Z", "_distro": "noble", "_jobs": [ { "job": 82472159114, "time": 121, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7764058437" }, { "job": 82472159112, "time": 119, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7764058203" }, { "job": 82472159101, "time": 104, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "7764056029" }, { "job": 82472159126, "time": 95, "config": "macos-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7764054922" }, { "job": 82472004244, "time": 157, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7764041965" }, { "job": 82472159090, "time": 95, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7764054825" }, { "job": 82472159165, "time": 93, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "7764054608" }, { "job": 82472159180, "time": 82, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "7764053299" }, { "job": 82472159175, "time": 91, "config": "windows-release", "r": "4.6.0", "check": "OK", "artifact": "7764054386" } ], "_buildurl": "https://github.com/r-universe/valentint/actions/runs/27866735088", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/valentint/spls", "_commit": { "id": "77be94a54f8185641f762d6880df1b512406cb94", "author": "Valentin Todorov ", "committer": "Valentin Todorov ", "message": "Update ChangeLog\n", "time": 1752141264 }, "_maintainer": { "name": "Valentin Todorov", "email": "valentin@todorov.at", "login": "valentint", "linkedin": "in/valentin-todorov-07958a1b", "description": "", "uuid": 6060681, "orcid": "0000-0003-4215-0245" }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 2.14", "role": "Depends" }, { "package": "MASS", "role": "Imports" }, { "package": "nnet", "role": "Imports" }, { "package": "parallel", "role": "Imports" }, { "package": "pls", "role": "Imports" } ], "_owner": "valentint", "_selfowned": true, "_usedby": 9, "_updates": [ { "week": "2025-26", "n": 14 }, { "week": "2025-27", "n": 3 }, { "week": "2025-28", "n": 3 } ], "_tags": [], "_stars": 0, "_contributors": [ { "user": "valentint", "count": 20, "uuid": 6060681 } ], "_userbio": { "uuid": 6060681, "type": "user", "name": "Valentin Todorov", "followers": 12 }, "_downloads": { "count": 13039, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/spls" }, "_mentions": 23, "_devurl": "https://github.com/valentint/spls", "_searchresults": 182, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/readme.html", "extra/readme.md", "extra/spls.html", "manual.pdf" ], "_homeurl": "https://github.com/valentint/spls", "_realowner": "valentint", "_cranurl": true, "_releases": [ { "version": "1.0-0", "date": "2008-11-08" }, { "version": "1.0-1", "date": "2008-11-09" }, { "version": "1.0-2", "date": "2008-11-12" }, { "version": "1.0-3", "date": "2009-01-26" }, { "version": "1.1-0", "date": "2009-05-20" }, { "version": "2.1-0", "date": "2009-11-09" }, { "version": "2.1-1", "date": "2012-01-04" }, { "version": "2.1-2", "date": "2012-06-10" }, { "version": "2.1-3", "date": "2013-07-01" }, { "version": "2.2-1", "date": "2013-08-21" }, { "version": "2.2-2", "date": "2018-03-21" }, { "version": "2.2-3", "date": "2019-05-05" }, { "version": "2.3-2", "date": "2025-06-30" } ], "_exports": [ "ci.spls", "coef.sgpls", "coef.spls", "coef.splsda", "coefplot.spls", "correct.spls", "cv.sgpls", "cv.spls", "cv.splsda", "heatmap.spls", "plot.spls", "predict.sgpls", "predict.spls", "predict.splsda", "print.sgpls", "print.spls", "print.splsda", "sgpls", "spls", "splsda" ], "_datasets": [ { "name": "lymphoma", "title": "Lymphoma Gene Expression Dataset", "object": "lymphoma", "file": "lymphoma.RData", "class": [ "list" ], "fields": [], "table": false, "tojson": true }, { "name": "mice", "title": "Mice Dataset", "object": "mice", "file": "mice.RData", "class": [ "list" ], "fields": [], "table": false, "tojson": true }, { "name": "prostate", "title": "Prostate Tumor Gene Expression Dataset", "object": "prostate", "file": "prostate.RData", "class": [ "list" ], "fields": [], "table": false, "tojson": true }, { "name": "yeast", "title": "Yeast Cell Cycle Dataset", "object": "yeast", "file": "yeast.RData", "class": [ "list" ], "fields": [], "table": false, "tojson": true } ], "_help": [ { "page": "ci.spls", "title": "Calculate bootstrapped confidence intervals of SPLS coefficients", "topics": [ "ci.spls" ] }, { "page": "coefplot.spls", "title": "Plot estimated coefficients of the SPLS object", "topics": [ "coefplot.spls" ] }, { "page": "correct.spls", "title": "Correct the initial SPLS coefficient estimates based on bootstrapped confidence intervals", "topics": [ "correct.spls" ] }, { "page": "cv.sgpls", "title": "Compute and plot the cross-validated error for SGPLS classification", "topics": [ "cv.sgpls" ] }, { "page": "cv.spls", "title": "Compute and plot cross-validated mean squared prediction error for SPLS regression", "topics": [ "cv.spls" ] }, { "page": "cv.splsda", "title": "Compute and plot cross-validated error for SPLSDA classification", "topics": [ "cv.splsda" ] }, { "page": "lymphoma", "title": "Lymphoma Gene Expression Dataset", "topics": [ "lymphoma" ] }, { "page": "mice", "title": "Mice Dataset", "topics": [ "mice" ] }, { "page": "plot.spls", "title": "Plot the coefficient path of SPLS regression", "topics": [ "plot.spls" ] }, { "page": "predict.sgpls", "title": "Make predictions or extract coefficients from a fitted SGPLS model", "topics": [ "coef.sgpls", "predict.sgpls" ] }, { "page": "predict.spls", "title": "Make predictions or extract coefficients from a fitted SPLS model", "topics": [ "coef.spls", "predict.spls" ] }, { "page": "predict.splsda", "title": "Make predictions or extract coefficients from a fitted SPLSDA model", "topics": [ "coef.splsda", "predict.splsda" ] }, { "page": "print.sgpls", "title": "Print function for a SGPLS object", "topics": [ "print.sgpls" ] }, { "page": "print.spls", "title": "Print function for a SPLS object", "topics": [ "print.spls" ] }, { "page": "print.splsda", "title": "Print function for a SPLSDA object", "topics": [ "print.splsda" ] }, { "page": "prostate", "title": "Prostate Tumor Gene Expression Dataset", "topics": [ "prostate" ] }, { "page": "sgpls", "title": "Fit SGPLS classification models", "topics": [ "sgpls" ] }, { "page": "spls", "title": "Fit SPLS regression models", "topics": [ "spls" ] }, { "page": "splsda", "title": "Fit SPLSDA classification models", "topics": [ "splsda" ] }, { "page": "yeast", "title": "Yeast Cell Cycle Dataset", "topics": [ "yeast" ] } ], "_readme": "https://github.com/valentint/spls/raw/HEAD/README.md", "_rundeps": [ "MASS", "nnet", "pls" ], "_vignettes": [ { "source": "spls-example.Rnw", "filename": "spls-example.pdf", "title": "Sparse PLS", "engine": "utils::Sweave", "headings": [ "Overview", "Input Data", "Tuning Parameters", "SPLS Fit", "eQTL Application" ], "created": "2025-06-27 17:04:57", "modified": "2025-06-27 17:04:57", "commits": 1 } ], "_score": 8.982770696526998, "_indexed": true, "_nocasepkg": "spls", "_universes": [ "valentint" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "2.3-3", "date": "2026-06-20T09:20:57.000Z", "distro": "noble", "commit": "77be94a54f8185641f762d6880df1b512406cb94", "fileid": "48e2bc1de23ec7762f4af659ad8a79108ad3c630473d114bfe7175a6313c3117", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/valentint/actions/runs/27866735088" }, { "r": "4.6.0", "os": "linux", "version": "2.3-3", "date": "2026-06-20T09:20:56.000Z", "distro": "noble", "commit": "77be94a54f8185641f762d6880df1b512406cb94", "fileid": "7730a4fde14835ca2092091debbb80d094ef659001bc4e01c8d4a24a5385ae89", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/valentint/actions/runs/27866735088" }, { "r": "4.5.3", "os": "mac", "version": "2.3-3", "date": "2026-06-20T09:20:48.000Z", "commit": "77be94a54f8185641f762d6880df1b512406cb94", "fileid": "1d4c7ac7966e126bd29d03cc431cab99937a4e145a2a6fecd6a73aa99edc7348", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/valentint/actions/runs/27866735088" }, { "r": "4.6.0", "os": "mac", "version": "2.3-3", "date": "2026-06-20T09:20:39.000Z", "commit": "77be94a54f8185641f762d6880df1b512406cb94", "fileid": "902b643590a2fc60f4c4dd6d57bb9363f5a8ae8b96c1f47e103b2536455938a4", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/valentint/actions/runs/27866735088" }, { "r": "4.6.0", "os": "wasm", "version": "2.3-3", "date": "2026-06-20T09:21:01.000Z", "commit": "77be94a54f8185641f762d6880df1b512406cb94", "fileid": "ad48ef7c5164ccee3ab52202f42c3ee2a05d391561357638cf8859bc53c25d3a", "status": "success", "buildurl": "https://github.com/r-universe/valentint/actions/runs/27866735088" }, { "r": "4.7.0", "os": "win", "version": "2.3-3", "date": "2026-06-20T09:20:22.000Z", "commit": "77be94a54f8185641f762d6880df1b512406cb94", "fileid": "e83512b821ae1b82677ec7d58b01916e1b78f64617cda37cb83c5e123a29810a", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/valentint/actions/runs/27866735088" }, { "r": "4.5.3", "os": "win", "version": "2.3-3", "date": "2026-06-20T09:20:13.000Z", "commit": "77be94a54f8185641f762d6880df1b512406cb94", "fileid": "0dd7a4d9ff68a951509887c8abb7ff4b3a031b2185e32032a569ae98daffe9ce", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/valentint/actions/runs/27866735088" }, { "r": "4.6.0", "os": "win", "version": "2.3-3", "date": "2026-06-20T09:20:22.000Z", "commit": "77be94a54f8185641f762d6880df1b512406cb94", "fileid": "ccad4e711ee74c284e2ba99cc89d2d0f17d554ff3fbffe93581b0032fd297919", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/valentint/actions/runs/27866735088" } ] }