Package: spls 2.3-3

spls: Sparse Partial Least Squares (SPLS) Regression and Classification

Provides functions for fitting a sparse partial least squares (SPLS) regression and classification (Chun and Keles (2010) <doi:10.1111/j.1467-9868.2009.00723.x>).

Authors:Dongjun Chung [aut], Hyonho Chun [aut], Sunduz Keles [aut], Valentin Todorov [cre]

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manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
spls/json (API)

# Install 'spls' in R:

install.packages('spls', repos = c('https://valentint.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/valentint/spls/issues

Datasets:

lymphoma - Lymphoma Gene Expression Dataset
mice - Mice Dataset
prostate - Prostate Tumor Gene Expression Dataset
yeast - Yeast Cell Cycle Dataset

On CRAN:

8.98 score 9 packages 182 scripts 13k downloads 23 mentions 20 exports 3 dependencies

Last updated from:77be94a54f. Checks:9 OK. Indexed: yes.

Target	Result	Time
linux-devel-x86_64	OK	121
source / vignettes	OK	157
linux-release-x86_64	OK	119
macos-release-arm64	OK	95
macos-oldrel-arm64	OK	104
windows-devel	OK	93
windows-release	OK	91
windows-oldrel	OK	82
wasm-release	OK	95

Exports:ci.spls coef.sgpls coef.spls coef.splsda coefplot.spls correct.spls cv.sgpls cv.spls cv.splsda heatmap.spls plot.spls predict.sgpls predict.spls predict.splsda print.sgpls print.spls print.splsda sgpls spls splsda

Dependencies:MASS nnet pls

Sparse PLS

Overview | Input Data | Tuning Parameters | SPLS Fit | eQTL Application

Rendered fromspls-example.Rnwusingutils::Sweave

Last update: 2025-06-27
Started: 2025-06-27

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Calculate bootstrapped confidence intervals of SPLS coefficients	ci.spls
Plot estimated coefficients of the SPLS object	coefplot.spls
Correct the initial SPLS coefficient estimates based on bootstrapped confidence intervals	correct.spls
Compute and plot the cross-validated error for SGPLS classification	cv.sgpls
Compute and plot cross-validated mean squared prediction error for SPLS regression	cv.spls
Compute and plot cross-validated error for SPLSDA classification	cv.splsda
Lymphoma Gene Expression Dataset	lymphoma
Mice Dataset	mice
Plot the coefficient path of SPLS regression	plot.spls
Make predictions or extract coefficients from a fitted SGPLS model	coef.sgpls predict.sgpls
Make predictions or extract coefficients from a fitted SPLS model	coef.spls predict.spls
Make predictions or extract coefficients from a fitted SPLSDA model	coef.splsda predict.splsda
Print function for a SGPLS object	print.sgpls
Print function for a SPLS object	print.spls
Print function for a SPLSDA object	print.splsda
Prostate Tumor Gene Expression Dataset	prostate
Fit SGPLS classification models	sgpls
Fit SPLS regression models	spls
Fit SPLSDA classification models	splsda
Yeast Cell Cycle Dataset	yeast